bioinformatics

an archive of posts with this tag

Mar 20, 2026 Pangenome Analysis with Anvi'o: From HPC to Publication-Ready Figures
Mar 19, 2026 Day 6 — Moving Your Data: scp, rsync, SFTP, and Globus Connect
Mar 18, 2026 Day 5 — Reproducible Pipelines: Snakemake and Nextflow
Mar 17, 2026 Day 4 — Scaling Analysis: For Loops vs SLURM Job Arrays
Mar 16, 2026 Day 3 — Running Jobs: Terminal, Bash Loops, and SLURM
Mar 13, 2026 Day 2 — Software Installation: sudo vs module load vs conda
Mar 12, 2026 Day 1 — Laptop vs HPC: Why Bioinformatics Needs Both
Feb 24, 2026 Day 5: Substrate Uptake & Utilization in Size-Fractionated Estuarine Microbiomes
Feb 20, 2026 Metagenome Analysis - Graduate Course Materials
Feb 18, 2026 10-Day Metagenome Analysis Series - Complete Summary
Feb 16, 2026 Day 10: Multi-Omics Integration - Metagenomics & Metatranscriptomics
Feb 13, 2026 Day 8: Workflow Wrappers & Web Platforms - Streamlining Metagenome Analysis
Feb 10, 2026 Day 5: Genome Annotation - Understanding Metabolic Potential
Feb 09, 2026 Day 4: Genome Dereplication & Taxonomic Classification - From MAGs to Species
Feb 06, 2026 Day 3: Genome Binning - Recovering Individual Genomes (MAGs) from Metagenomes
Feb 04, 2026 Day 2: Metagenome Assembly - Reconstructing Genomes from Short Reads
Feb 02, 2026 Day 1: Quality Control, Contamination Removal, and Read-Based Taxonomic Analysis
Jan 30, 2026 Genome-Resolved Metabolism: From Metabolic Potential to Co-Metabolism Networks
Jan 26, 2026 Building Custom HUMAnN3 Databases with Struo2 and GTDB: A Realistic Guide from the Trenches