bioinformatics

an archive of posts with this tag

May 19, 2026 What Do Viruses Do? Auxiliary Metabolic Genes and Viral Metabolism with DRAM-v
May 13, 2026 Who Do Viruses Infect? Host Prediction with iPHoP, BLAST, and Viral Lifestyle with PhaBOX2
May 06, 2026 Who Are These Viruses? Taxonomy and Abundance from Viral OTUs
May 04, 2026 From Metagenome to Viral OTUs: Identifying, Filtering, and Clustering Viral Genomes
Apr 30, 2026 Building a Custom GTDBtk Database for HUMAnN3 — A Gene Catalogue Approach for Environmental Metagenomics
Apr 27, 2026 Genome Coverage — What It Is, Why It Matters, and How to Calculate It for NCBI Submission
Apr 22, 2026 Genome Annotation Tools — From RAST's 19% to a Complete Picture with PGAP, eggNOG, DRAM, and InterProScan
Apr 16, 2026 Genome Visualization Tools — A Beginner's Guide to Seeing Your Genome
Apr 10, 2026 Conda, Mamba, Micromamba — What's the Difference (and What You Should Actually Use)
Mar 20, 2026 Pangenome Analysis with Anvi'o: From HPC to Publication-Ready Figures
Mar 19, 2026 Day 6 — Moving Your Data: scp, rsync, SFTP, and Globus Connect
Mar 18, 2026 Day 5 — Reproducible Pipelines: Snakemake and Nextflow
Mar 17, 2026 Day 4 — Scaling Analysis: For Loops vs SLURM Job Arrays
Mar 16, 2026 Day 3 — Running Jobs: Terminal, Bash Loops, and SLURM
Mar 13, 2026 Day 2 — Software Installation: sudo vs module load vs conda
Mar 12, 2026 Day 1 — Laptop vs HPC: Why Bioinformatics Needs Both
Feb 24, 2026 Day 5: Substrate Uptake & Utilization in Size-Fractionated Estuarine Microbiomes
Feb 20, 2026 Metagenome Analysis - Graduate Course Materials
Feb 18, 2026 10-Day Metagenome Analysis Series - Complete Summary
Feb 16, 2026 Day 10: Multi-Omics Integration - Metagenomics & Metatranscriptomics
Feb 13, 2026 Day 8: Workflow Wrappers & Web Platforms - Streamlining Metagenome Analysis
Feb 10, 2026 Day 5: Genome Annotation - Understanding Metabolic Potential
Feb 09, 2026 Day 4: Genome Dereplication & Taxonomic Classification - From MAGs to Species
Feb 06, 2026 Day 3: Genome Binning - Recovering Individual Genomes (MAGs) from Metagenomes
Feb 04, 2026 Day 2: Metagenome Assembly - Reconstructing Genomes from Short Reads
Feb 02, 2026 Day 1: Quality Control, Contamination Removal, and Read-Based Taxonomic Analysis
Jan 30, 2026 Genome-Resolved Metabolism: From Metabolic Potential to Co-Metabolism Networks
Jan 26, 2026 Building Custom HUMAnN3 Databases with Struo2 and GTDB: A Realistic Guide from the Trenches