beginners

an archive of posts with this tag

Jun 15, 2026 Your Code Is a Publication: How to Make Bioinformatics Workflows Citable with Zenodo
Jun 13, 2026 Excel Skills Every Bioinformatician Should Know (And Isn't Embarrassed to Use)
Jun 12, 2026 Free-living or Particle-attached? Classifying 2,000 Estuarine Genomes by Lifestyle from Paired Metagenomes
Jun 10, 2026 Who Eats Particles and Who Lives Free? CAZyme and Transporter Analysis Across 1,824 Estuarine Genomes
Jun 09, 2026 Why Every Bioinformatician Should Learn Git (And How to Set It Up Today)
Jun 08, 2026 Linux Commands I Use Every Day as a Bioinformatician
Jun 05, 2026 Differential Abundance Analysis for MAGs: DESeq2, ANCOM-BC, ALDEx2, and MaAsLin2
Jun 04, 2026 Who Shared What With Whom? Detecting Horizontal Gene Transfer in Estuarine Metagenomes with LocalHGT
Jun 03, 2026 Pangenomes, Biosynthetic Potential, and Population Structure: A Population Genomics Workflow
Jun 01, 2026 Finding Fungi in Shotgun Metagenomes: A Kaiju-Based Mycobiome Workflow
May 27, 2026 Beyond Expression: Normalizing Metatranscriptomic Signal with MTXmodel
May 19, 2026 Who Is Actually Active? Uncovering Active Viral Communities from Metatranscriptomes
May 19, 2026 What Do Viruses Do? Auxiliary Metabolic Genes and Viral Metabolism with DRAM-v
May 15, 2026 Mapping the Viral Universe: Network Analysis of Viral Communities with vConTACT2 and Cytoscape
May 13, 2026 Who Do Viruses Infect? Host Prediction with iPHoP, BLAST, and Viral Lifestyle with PhaBOX2
May 06, 2026 Who Are These Viruses? Taxonomy and Abundance from Viral OTUs
May 04, 2026 From Metagenome to Viral OTUs: Identifying, Filtering, and Clustering Viral Genomes
Mar 20, 2026 Pangenome Analysis with Anvi'o: From HPC to Publication-Ready Figures
Mar 19, 2026 Day 6 — Moving Your Data: scp, rsync, SFTP, and Globus Connect
Mar 18, 2026 Day 5 — Reproducible Pipelines: Snakemake and Nextflow
Mar 17, 2026 Day 4 — Scaling Analysis: For Loops vs SLURM Job Arrays
Mar 16, 2026 Day 3 — Running Jobs: Terminal, Bash Loops, and SLURM
Mar 13, 2026 Day 2 — Software Installation: sudo vs module load vs conda
Mar 12, 2026 Day 1 — Laptop vs HPC: Why Bioinformatics Needs Both
Mar 02, 2026 Day 1 — Why Normal Statistics Fail for Microbiome Data (And What We Use Instead)