| Mar 24, 2026 | |
| Mar 20, 2026 | Pangenome Analysis with Anvi'o: From HPC to Publication-Ready Figures |
| Mar 19, 2026 | Day 6 — Moving Your Data: scp, rsync, SFTP, and Globus Connect |
| Mar 18, 2026 | Day 5 — Reproducible Pipelines: Snakemake and Nextflow |
| Mar 17, 2026 | Day 4 — Scaling Analysis: For Loops vs SLURM Job Arrays |
| Mar 16, 2026 | Day 3 — Running Jobs: Terminal, Bash Loops, and SLURM |
| Mar 13, 2026 | Day 2 — Software Installation: sudo vs module load vs conda |
| Mar 12, 2026 | Day 1 — Laptop vs HPC: Why Bioinformatics Needs Both |
| Mar 11, 2026 | Day 8 — From Raw Data to Paper Figures: A Complete Microbiome Stats Workflow |
| Mar 10, 2026 | Day 7 — Correlation Analysis & Mantel Test: Linking MAGs to Environment |
| Mar 09, 2026 | Day 6 — WGCNA for Microbiome Co-Abundance Networks: From Individual MAGs to Modules |
| Mar 06, 2026 | Day 5 — Multiple Regression for MAG Abundance: Linking Genomics to Environment |
| Mar 05, 2026 | Day 4 — Non-Parametric Tests for Microbiome Data: Wilcoxon, Kruskal-Wallis & Effect Sizes |
| Mar 04, 2026 | Day 3 — PERMANOVA with adonis2: Testing Real Community Differences |
| Mar 03, 2026 | Day 2 — Constrained Ordination: RDA & dbRDA for Microbiome Community Analysis |
| Mar 02, 2026 | Day 1 — Why Normal Statistics Fail for Microbiome Data (And What We Use Instead) |
| Feb 27, 2026 | From Messy Subfolders to Analysis-Ready FASTA: Rename with Python + Collect with Linux find |
| Feb 24, 2026 | Day 5: Substrate Uptake & Utilization in Size-Fractionated Estuarine Microbiomes |
| Feb 20, 2026 | Metagenome Analysis - Graduate Course Materials |
| Feb 18, 2026 | 10-Day Metagenome Analysis Series - Complete Summary |
| Feb 16, 2026 | Day 10: Multi-Omics Integration - Metagenomics & Metatranscriptomics |
| Feb 14, 2026 | Day 9: Visualization & Publication - Making Data Tell Stories |
| Feb 13, 2026 | Day 8: Workflow Wrappers & Web Platforms - Streamlining Metagenome Analysis |
| Feb 12, 2026 | Day 7: Comparative Genomics & Statistical Analysis - Connecting Genomes to Environment |
| Feb 10, 2026 | Day 5: Genome Annotation - Understanding Metabolic Potential |
| Feb 09, 2026 | Day 4: Genome Dereplication & Taxonomic Classification - From MAGs to Species |
| Feb 06, 2026 | Day 3: Genome Binning - Recovering Individual Genomes (MAGs) from Metagenomes |
| Feb 04, 2026 | Day 2: Metagenome Assembly - Reconstructing Genomes from Short Reads |
| Feb 02, 2026 | Day 1: Quality Control, Contamination Removal, and Read-Based Taxonomic Analysis |
| Jan 30, 2026 | Genome-Resolved Metabolism: From Metabolic Potential to Co-Metabolism Networks |
| Jan 29, 2026 | Size-Fractionated Microbiome Analysis — Day 4: Gene Catalog Construction & Functional Annotation |
| Jan 28, 2026 | Bridging Clinical and Ecological ML: From Heart Disease to Soil Ecosystem Multifunctionality |
| Jan 26, 2026 | Building Custom HUMAnN3 Databases with Struo2 and GTDB: A Realistic Guide from the Trenches |
| Jan 22, 2026 | Visualize Your Data — Day 5: Bubble Plots in Bioinformatics |
| Jan 21, 2026 | Visualize Your Data — Day 4: Volcano Plots in Bioinformatics |
| Jan 20, 2026 | Visualize Your Data — Day 3: Ordination Plots (PCA, PCoA, NMDS) in Bioinformatics |
| Jan 19, 2026 | Visualize Your Data — Day 2: Heatmaps in Bioinformatics |
| Jan 14, 2026 | Visualize Your Data — Day 1: Box Plot vs Violin Plot in Bioinformatics |
| Jan 14, 2026 | Whole Genome Sequencing — Day 5: Comparative & Downstream Genomic Analyses |
| Jan 13, 2026 | Whole Genome Sequencing — Day 4: Genome Annotation & Functional Potential |
| Jan 12, 2026 | Whole Genome Sequencing — Day 3: Taxonomy, Phylogeny & Genome Similarity |
| Jan 08, 2026 | Whole Genome Sequencing — Day 2: Genome Assembly, Quality Assessment, and Topology |
| Jan 07, 2026 | Whole Genome Analysis — Day 1: From Raw Reads to Clean, Assembly-Ready Data |
| Jan 01, 2026 | Exploring the Pan-Genome with panX: A Practical Workflow for DARPA Isolates |