Topic: Genomes & MAGs

This page lists all posts related to genome assembly, annotation, comparative genomics, and genome-resolved workflows.

• Genome Coverage — What It Is, Why It Matters, and How to Calculate It for NCBI Submission (Apr 27, 2026)
• Genome Annotation Tools — From RAST's 19% to a Complete Picture with PGAP, eggNOG, DRAM, and InterProScan (Apr 22, 2026)
• Genome Visualization Tools — A Beginner's Guide to Seeing Your Genome (Apr 16, 2026)
• Co-occurrence Networks from Genome Abundance Data — A Complete R Workflow (Apr 14, 2026)
• Genome-Resolved Metabolism: From Metabolic Potential to Co-Metabolism Networks (Jan 30, 2026)
• Extracting Full-Length 16S rRNA from Bacterial Genomes Using Barrnap (Dec 29, 2025)
• From Genome Assembly to Novel Species: A Step-by-Step Genomic Workflow (Dec 23, 2025)
• Genome Topology and Genome Announcement Reports: A Practical, Reviewer-Safe Workflow (Dec 17, 2025)
• Cleaning and Preparing Genomes for NCBI Submission — A Complete Workflow (Dec 05, 2025)
• GTDB-Tk Complete Workflow (Dec 03, 2025)
• Genome Assembly Day: Shovill for Illumina & Flye for Nanopore Reads (Dec 02, 2025)
• Visualizing Genome Assemblies with Bandage: Building from Source on Linux (Dec 01, 2025)