Publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

📄 Manuscripts Under Review & In Preparation

Preprints available_Under review (biorxiv/uponrequest)

1. Functional redundancy and metabolic flexibility of microbial communities in two Mid-Atlantic bays

Jojy John, Maximiliano Ortiz, Pierre Ramond, and Barbara J. Campbell (2025)
Status: Under review in ISME Communications
Keywords: Metagenomes, Metatranscriptomes, Statistical modeling_preprint available on request

2. Ecological distribution and environmental drivers of Actinobacteriota in two Mid-Atlantic estuaries

Mir Alvee Ahmed, Jojy John, Barbara J. Campbell (2025)
Target Journal: Applied and Environmental Microbiology (AEM)
Keywords: Metagenomes, Metatranscriptomes, Estuarine microbiomes see preprint at :https://www.biorxiv.org/content/10.1101/2025.11.21.689735v1

3. Comparative genomic and phenotypic analysis of Streptomyces rochei SOSIST-3 isolated from the Southern Ocean

Jojy John†, Manigundan K.†, Radhakrishnan M., Amit Kumar, Abirami B., Parli V. B. (2025)
_Status: Under review in Molecular Biology Reports_preprint available on request
Keywords: Whole-genome analysis, Gene annotation

4. Nanoliposome co-delivery of Amoxicillin and Tazobactam remediates intracellular infection by multidrug-resistant Salmonella enterica serovar Typhimurium

Trisha S., Unnikrishnan K., Satwik M., Jojy John, Charles V., Zhixuan F., Marie B., Jennifer R., Saji George (2025)
Status: Under review in Nature – Journal of Antibiotics
Keywords: Whole-genome sequencing, Plasmid analysis-preprint available on request

5. Phototrophy and chemolithotrophy drive microbial resilience to monsoon hypoxia in the Arabian Sea

Jojy John, R. Dineshram (2025)
Status: Under review in Frontiers in Microbiology
Keywords: Metagenomics, Hypoxia, Arabian Sea-preprint available on request

6. Genomic Insights into Carbohydrate-Active Enzymes and Antimicrobial Potential of a Novel Species of Radiobacillus Isolated from the Antarctic Red Macroalgae Pyropia endiviifolia

Jojy John1, Amit Kumar, Matias Goddard, Radhakrishnan Manikkam, Javiera Molina, Sergio Leiva _Status:under review in World Journal of Microbiology and Biotechnology Keywords: Whole genome sequencing, Novel strain, Carageenase degradation-preprint available on request

🟡 Ready for Submission / In Preparation

7. Microbial hydrocarbon degradation shaped by spatial and temporal changes in estuarine environments

Dinuka Lakmali Jayasuriya Patabandige, Jojy John, Maximiliano Ortiz, Barbara J. Campbell (2025)
Target Journal: mSphere
Keywords: Metagenomes, Metatranscriptomes, Hydrocarbon degradation

8. Genome assemblies of 200 marine bacterial isolates reveal extensive functional diversity

(2025)
Status: Manuscript in preparation; genomes submitted to NCBI
Target Journal: Microbiology Resource Announcements
Keywords: Whole-genome sequencing, Hybrid assembly, Marine biofilms


📚 Published Papers

2025

  1. deepsea.jpg
    Deep-sea Life associated with sediments and polymetallic nodules from the Central Indian Ocean Basin: Insights from 18S metabarcoding
    Dineshram Ramadoss, Bharath Subramanyam Ammanabrolu, Aneesha Acharya, and 2 more authors
    Deep Sea Research Part II: Topical Studies in Oceanography, 2025
  2. mp.jpg
    The first report on emerged microplastics in deep-sea sediment: Insights from the Central Indian Ocean Basin
    Dineshram Ramadoss, Akhil Biju, Chayanika Rathore, and 5 more authors
    Marine Pollution Bulletin, 2025

2020

  1. dye.jpg
    Bio-decolorization of synthetic dyes by a halophilic bacterium Salinivibrio sp.
    Jojy John, Ramadoss Dineshram, Kaveripakam Raman Hemalatha, and 3 more authors
    Frontiers in Microbiology, 2020
  2. mk.png
    Unveiling cultivable and uncultivable halophilic bacteria inhabiting Marakkanam saltpan, India and their potential for biotechnological applications
    Jojy John, Vinu Siva, Richa Kumari, and 2 more authors
    Geomicrobiology Journal, 2020

2019

  1. sv.png
    Life in high salt concentrations with changing environmental conditions: insights from genomic and phenotypic analysis of Salinivibrio sp.
    Jojy John, Vinu Siva, Kumari Richa, and 2 more authors
    Microorganisms, 2019

2017

  1. mr.png
    Physiological tolerance of the early life history stages of fresh water prawn (Macrobrachium rosenbergiiDe Man, 1879) to environmental stress
    J John, VS Siva, A Kumar, and 5 more authors
    2017